arXiv Analytics

Sign in

arXiv:1407.0477 [cond-mat.stat-mech]AbstractReferencesReviewsResources

A Variational Approach to Enhanced Sampling and Free Energy Calculations

Omar Valsson, Michele Parrinello

Published 2014-07-02, updated 2014-08-07Version 3

The ability of widely used sampling methods, such as molecular dynamics or Monte Carlo, to explore complex free energy landscapes is severely hampered by the presence of kinetic bottlenecks. A large number of solutions have been proposed to alleviate this problem. Many are based on the introduction of a bias potential which is a function of a small number of collective variable. However constructing such a bias is not simple. Here we introduce a functional of the bias potential and an associated variational principle. The bias that minimizes the functional relates in a simple way to the free energy surface. This variational principle can be turned into a practical, efficient and flexible sampling method. A number of numerical examples are presented which include the determination of a three dimensional free energy surface. We argue that, beside being numerically advantageous, our variational approach provides a convenient standpoint for looking with novel eyes at the sampling problem.

Related articles: Most relevant | Search more
arXiv:0704.0761 [cond-mat.stat-mech] (Published 2007-04-05, updated 2007-04-08)
Failure of the work-Hamiltonian connection for free energy calculations
arXiv:1401.0387 [cond-mat.stat-mech] (Published 2014-01-02)
Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration
arXiv:0910.4914 [cond-mat.stat-mech] (Published 2009-10-26, updated 2010-04-13)
Enhanced Sampling in the Well-Tempered Ensemble