{
  "id": "2112.13558",
  "version": "v2",
  "published": "2021-12-27T07:53:26.000Z",
  "updated": "2022-07-22T09:31:59.000Z",
  "title": "Token-driven totally asymmetric simple exclusion process",
  "authors": [
    "Bor Kavčič",
    "Gašper Tkačik"
  ],
  "comment": "19 pages, 20 figures. Added supplementary simulation results for different lattice lengths, additional explanation, and slightly modified figures",
  "categories": [
    "cond-mat.stat-mech",
    "physics.bio-ph"
  ],
  "abstract": "We consider a totally asymmetric simple exclusion process (TASEP) consisting of particles on a lattice that require binding by a \"token\" to move. Using a combination of theory and simulations, we address the following questions: (i) How token binding kinetics affects the current-density relation; (ii) How the current-density relation depends on the scarcity of tokens; (iii) How tokens propagate the effects of the locally-imposed disorder (such as a slow site) over the entire lattice; (iv) How a shared pool of tokens couples concurrent TASEPs running on multiple lattices; (v) How our results translate to TASEPs with open boundaries that exchange particles with the reservoir. Since real particle motion (including in systems that inspired the standard TASEP model, e.g., protein synthesis or movement of molecular motors) is often catalyzed, regulated, actuated, or otherwise mediated, the token-driven TASEP dynamics analyzed in this paper should allow for a better understanding of real systems and enable a closer match between TASEP theory and experimental observations.",
  "revisions": [
    {
      "version": "v2",
      "updated": "2022-07-22T09:31:59.000Z"
    }
  ],
  "analyses": {
    "keywords": [
      "totally asymmetric simple exclusion process",
      "token-driven totally asymmetric simple exclusion",
      "couples concurrent taseps running"
    ],
    "note": {
      "typesetting": "TeX",
      "pages": 19,
      "language": "en",
      "license": "arXiv",
      "status": "editable"
    }
  }
}